Publications

Recent Publications

Scientific publications: 1 book edited and 2 books co-edited, 22 book chapters, 17 reviews and 119 published, 3 patents; H-factor 47, total citations 12,346 (Google Scholar October 2019)

Books

  1. Roessner U, Dias D (Eds) (2013) Metabolomics Tools for Natural Product Discoveries. In Methods in Molecular Biology Series. Humana Press USA

  2. Roessner U (Ed) (2012) Metabolomics. InTech Open Access Publisher

  3. Villas-Boas SG, Roessner U, Hansen M, Smedsgaard J, Nielsen J (Eds)(2007) Metabolome Analysis. Publ. Wiley & Sons, New Jersey, NJ, USA (I wrote and edited 2 chapters)

Book Contributions

  1. Schillaci M, Gupta S, Walker R, Roessner U (2019) The role of plant growth promoting bacteria in cereals growth under abiotic stresses. In: Root Biology – Growth, Physiology, and Functions. InTech Open Access, London, UK (DOI: 10.5772/intechopen.87083)

  2. Sarabia D, Hill CB, Boughton BA, Roessner U (2018) Advances of metabolite profiling of plants in challenging environments. Annuals Plant Reviews Online, Issue 2 (doi.org/10.1002/9781119312994.apr0627)

  3. Dayalan S, Xia J, Soicer RA, Salek R, Roessner U (2018) Metabolome analysis. In: Encyclopedia of Bioinformatics and Computational Biology. Volume 2, 2019, Pages 396-409 Elsevier (org/10.1016/B978-0-12-809633-8.20251-3)

  4. Jayasinghe NS, Mendis H, Roessner U, Dias U (2018) Quantification of sugars and organic acids in biological matrices using gas chromatography-triple quadrupole-mass spectrometry (GC-QqQ-MS). In: Plant Metabolomics. Antonio C (ed). In Methods in Molecular Biology Series. Humana Press USA

  5. Rupasinghe, TWT, Roessner U (2018) Untargeted plant lipidomics. In: Plant Metabolomics. Antonio C (ed). In Methods in Molecular Biology Series. Humana Press

  6. Rupasinghe TWT, Roessner U (2016) Lipid extraction. In Encyclopaedia of Lipidomics. Wenk M (Ed). Springer

  7. Hill CB, Dias DA, Roessner U (2015) Current and emerging applications of metabolomics in the field of agricultural biotechnology. In: Advance in Food Biotechnology. Ray, R (Ed). Wiley, Oxford, UK

  8. Dias DA, Roessner U (2014) Applications of metabolomics to investigate pathogenic microorganisms for human health. In: Metabolomics and systems biology in human health and medicine. Jones, OAH (Ed). CABI, Oxfordshire, UK

  9. Hill CB, Roessner U (2014) Advances in high-throughput untargeted LC-MS analysis for plant metabolomics. Future Science eBook Series “Advanced LC-MS applications for metabolomics”. Future Science Group, UK

  10. Hill CB, Bacic A, Roessner U (2014) LC-MS profiling to link metabolic and phenotypic diversity in plant mapping populations. In: Mass Spectrometry Methods in Metabolomics. Raftery D (ed). In Methods in Molecular Biology Series. Humana Press USA

  11. Roessner U, Dias D (2013) Plant tissue extraction for metabolomics. In: Metabolomics Tools for Natural Product Discoveries. Roessner U and Dias D (eds). In Methods in Molecular Biology Series. Humana Press USA

  12. Hill CB, Roessner U (2013) Plant metabolomics using GC-MS. In: GC-MS metabolomics handbook. Weckwerth W (ed). Springer

  13. Roessner U, Beckles DM (2012) Metabolomics in salinity research. In: Plant Salinity Tolerance. Shabala S (ed). In: Methods in Molecular Biology Series. Humana Press USA

  14. Beckles D, Roessner U (2011) Plant Metabolomics – Applications and opportunities for agricultural biotechnology. In “Plant biotechnology and agriculture: Prospects for the 21st century” Altmann A and Hasegawa PM (eds), Elsevier

  15. Roessner U, Nahid A, Hunter A, Bellgard M (2011) Metabolomics – the combination of analytical chemistry, biology and informatics. In: Moo-Young M, (ed.) Comprehensive Biotechnology, Second Edition, vol. 1, pp. 447-459. Elsevier

  16. Bowne J, Bacic A, Tester M, Roessner U (2011) Abiotic stress and Metabolomics. In: Annual Plant Reviews Volume 43, Biology of Plant Metabolomics, First Edition. Hall R (ed), pp 61–85, Blackwell Publishing

  17. Gresshoff PM, Indrasumunar A, Miyahara A, Nontachaiyapoom S, Biswas B, Lin Y-H, Lin M-H, Reid D, Callahan D, Capon R, Zhang H, Jiang Q, Hirani T, Kobe B, Men A, Hayashi S, Scott PT, Kereszt A, Miyagi M, Li DX, Chan PK, Roessner U, Djordjevic MA, Kinkema M, Ferguson B (2009) Functional genomic analysis of systemic cell division regulation in legumes. In: Shu QY (ed.) Induced Plant Mutations in the Genomics Era. Food and Agriculture Organization of the United Nations. Rome, 2009, 399-402

  18. Roessner U, Beckles DM (2009) Metabolite measurements. In “Plant Metabolic Networks” Junker B and Schwender J, eds., Springer, Heidelberg, Germany

  19. Roessner-Tunali U (2007) Uncovering the plant metabolome: current and future challenges. In “Concepts in Plant Metabolomics“ Nikolau BJ and Wurtele ES, eds., Springer, Dortrecht, The Netherlands

  20. Tarpley L, Roessner U (2007) Metabolomics: Enabling systems-level phenotyping in rice functional genomics. In “Rice Functional Genomics- Challenges, Progress and Prospects”, Upadhyaya NM, ed., Springer, Heidelberg, Germany, pp 91-108

  21. Roessner U, Pettolino F (2007) The importance of anatomy and physiology in plant metabolomics. In “Metabolomics” of the book series Trends in Current Genetics, Jewett MC and Nielson J, eds., Springer, Heidelberg, Germany

  22. Fernie AR, Roessner U, Willmitzer L (2002) Metabolic profiling of plant cells. Web essay 11.2 in Taiz L and Zeiger E „Plant Physiology“, 3. Edition, Sinauer Associates, Inc., Publisher

Review articles in refereed scientific journals

  1. Munir N, Hasnain M, Roessner U, Abideen Z (2021) Strategies in improving plant salinity resistance and use of salinity resistant plants for economic sustainability. Critical Reviews in Environmental Science and Technology (doi.org/10.1080/10643389.2021.1877033)

  2. Gupta S, Schillaci M, Walker R, Smith PMC, Watt M, Roessner U (2020) Alleviation of salinity stress in plants by endophytic plant-fungal symbiosis: Current knowledge, perspectives and future directions. Plant and Soil (/doi.org/10.1007/s11104-020-04618-w)

  3. Walker R, Otto-Pille C, Gupta S, Schillaci M, Roessner U (2020) Current perspectives and applications in plant probiotics. Microbiology Australia In Focus (1071/MA20024)

  4. Ogden M, Hoefgen R, Roessner U, Persson S, Khan GA (2018) Feeding the walls: how does nutrient availability regulate cell wall architecture? International Journal of Molecular Sciences 19, 2691 (doi.org/10.3390/ijms19092691)

  5. Boughton BA, Thinagaran D, Sarabia D, Bacic A, Roessner U (2016) Mass spectrometry imaging for plant biology: A review. Phytochem 15, 455-488

  6. Hill CB, Czauderna T, Klapperstück M, Roessner U, Schreiber F (2015) Metabolomics, standards and metabolic modeling for synthetic biology in plants. Frontiers Bioeng Biotechnol 3, 16, doi: 10.3389/fbioe.2015.00167

  7. Jones OAH, Dias DA, Callahan DL, Kouremenos KA, Beale DJ, Roessner U (2014) The use of metabolomics in the study of metals in biological systems. (2014) Metallomics 7, 29-38

  8. Sumner LW, Lei Z, Nikolau BJ, Saito K, Roessner U, Trengove R (2014) Proposed quantitative and alphanumeric metabolite identification metrics. Metabolomics, 10, 1047-1049

  9. Cogger VC, Roessner U, Warren A, Fraser R, Le Couteur DG (2013) A sieve-raft hypothesis for the regulation of endothelial fenestrations. Comp Structural Biotechnol J 8, e201308003. doi: 10.5936/csbj.201308003

  10. Shelden MC, Roessner U (2013) Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals. Frontiers Plant Sci 4, 123, doi: 10.3389/fpls.2013.00123

  11. Dias D, Urban S, Roessner U (2012) A historical overview of natural products in drug discovery. Metabolites 2, 303-336

  12. Roessner U, Bowne J (2009) What is metabolomics all about? Biotechniques 46:363-365

  13. Sanchez DH, Siahpoosh MR, Roessner U, Udvardi U, Kopka J (2008) Plant metabolomics reveals conserved and divergent metabolic responses to salinity. Physiol Plantarium 132:209-219

  14. Fiehn O, Sumner L, Ward J, Rhee SY, Dickerson J, Lange M, Lane G, Roessner U, Last R, Nikolau B (2007) Minimum reporting standards for plan biology context in metabolomic studies. Metabolomics 3, 195-201

  15. Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, Kopka J, Lane GA, Lange BM, Liu JR, Mendes P, Nikolau BJ, Oliver SG, Paton NW, Rhee S, Roessner-Tunali U, Saito K, Smedsgaard J, Sumner LW, Wang T, Walsh S, Syrkin Wurtele E, Kell DB (2004) A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotech 22, 1601-1606

  16. Bino RJ, Hall RH, Fiehn O, Kopka J, Saito K, Draper J, Nikolau B, Mendes P, Roessner-Tunali U, Beale M, Trethewey RN, Lange BM, Syrkin Wurtele E, Sumner L (2004) Opinion: Potential of metabolomics as a functional genomics tool. Trends Plant Sci 9, 418-425

  17. Roessner U, Willmitzer L, Fernie AR (2002) Metabolic profiling and biochemical phenotyping of plant systems. Plant Cell Rep 21, 189-196

    Accepted and Published

    1. Mau L, Kant J, Walker R, Kuchendorf C, Schrey SD, Roessner U, Watt M (2021) Wheat can access phosphorus from algal biomass as quickly and continuously as from mineral fertilizer: an analysis of time-resolved phenotyping data and elemental mass balance. Frontiers in Plant Science, Section Plant Nutrition (org/10.3389/fpls.2021.631314)

    2. Cheong BE, Beine-Golovchuk O, Gorka M, Ho WWH, Martinez-Seidel F, Firmino AAP, Skirycz A, Roessner U, Kopka J (2020) Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports (org/10.1038/s41598-021-81610-z)

    3. Matthew JL, Cunning R, Ritson-Williams R, Oakley CA, Lutz A, Roessner U, Crossman AR, Weis VM, Gates RD, Davy SK (2020) Metabolite pools of the reef building coral Montipora capitata are unaffected by Symbiodiniaceae community composition. Coral Reefs (doi.org/10.1007/s00338-020-01999-3)

    4. Kehelpannala C, Rupasinghe TWT, Hennessy T, Bradley D, Ebert B, Roessner U (2020) A comprehensive comparison of four methods for extracting lipids from Arabidopsis tissues. Plant Methods 16, 155 (org/10.1186/s13007-020-00697-z)

    5. Zhang Y, Chen C-X, Feng H-P, Wang Z-J, Roessner U, Walker R, Cheng Z-Y, An-Y-Q, Du B, Bai J-G (2020) Transcriptome profiling combined with activities of antioxidant and soil enzymes reveals an ability of pseudomonas sp. CFA to mitigate p-hydroxybenzoic and ferulic acid stresses in cucumber. Frontiers in Microbiology (org/10.3389/fmicb.2020.522986)

    6. Schillaci M, Arsova B, Walker R, Smith P, Nagel K, Roessner U, Watt M (2020) Time-resolution of the shoot and root growth of the model cereal Brachypodium in response to inoculation with Azospirillum bacteria at low phosphorus and temperature. Plant Growth Regulation (org/10.1007/s10725-020-00675-4)

    7. Martelli F, Zhongyuan Z, Wang J, Wong C-O, Karagas, NE, Roessner U, Rupasinghe TWT, Venkatachalam K, Perry T, Bellen H, Batterham P (2020) Low doses of the neonicotinoid insecticide imidacloprid induce ROS triggering neurological and metabolic impairments in Drosophila. PNAS (org/10.1073/pnas.2011828117)

    8. Vasiljevski ER, Houweling P, Rupasinghe T, Kaur T, Summers MA, Roessner U, Little DG, Schindeler A (2020) Evaluating modified diets and dietary supplement therapies for reducing muscle lipid and improving muscle function in neurofibromatosis type 1 (NF1). PLOSOne (doi.org/10.1371/journal.pone.0237097)

    9. Gao J, Wang F, Ranathunge K, Arruda A, Cawthray G, Clode P, He X, Leopold M, Roessner U, Rupasinghe T, Zhong H, Lambers H (2020) A unique calcium requirement to balance accumulation of trans-aconitate accounts for the raity of Grevillea thelemanniana in a biodiversity hotspot. New Phytologist (doi: 10.1111/nph.16833)

    10. Homayoonzadeh M, Meoini P, Talebi K, Roessner U, Hosseininaveh V (2020) Antoxoidant system status of cucumber plants under pesticide treatment. Acta Physiologiae Plantarum (DOI: 10.1007/s11738-020-03150-9)

    11. Cheong BE, Onyemaobi O, Ho WWH, Biddulph B, Rupasinghe TWT, Roessner U, Dolferus R (2020) Phenotyping the chilling and frost responses of young microspore stage wheat spikes using targeted metabolome and lipidome profiling. Cell 9(5): 1309 (doi: 10.3390/cells9051309)

    12. Gottlieb S, Rand J, Anderson S, Morton JM, Dias DA, Boutghton BA, Roessner U, Ramadan Z (2020) Metabolic profiling of diabetic cats in remission. Frontiers Veternary Science (doi.org/10.3389/fvets.2020.00218)

    13. Ho WWH, Hill CB, Doblin M, Shelden MC, Rupasinghe TWT, Bacic A, Roessner U (2019) Integrative multi-omics analyses of barley rootzones under salinity stress reveal two distinctive salt tolerance mechanisms. Plant Communication https://doi.org/10.1016/j.xplc.2020.100031

    14. Yu D, Boughton BA, Hill CB, Feussner I, Roessner U, Rupasinghe TWT (2020) Insights into oxidised lipid modification in barley roots as an adaptation mechanism to salinity stress. Frontiers in Plant Science https://doi.org/10.3389/fpls.2020.00001

    15. Kwa FA, Dulull NK, Roessner U, Dias DA, Rupasinghe TWT (2020) Lipidomics reveal the protective effects of a vegetable-derived isothiocyanate against retinal degeneration. F1000Reseaech, 8, 1067 (doi: 12688/f1000research.19598.3)

    16. Sarabia D, Boughton BA, Rupasinghe TWT, Callahan DA, Hill CB, Roessner U (2020) Comparative spatial lipidomics analysis reveals cellular lipid remodelling in different developmental zones of barley roots in response to salt. Plant Cell Environment 43, 327-343 (doi: 10.1111/pce.13653)

    17. Wong JW-H, Plett K. Natera S, Roessner U, Anderson I, Plett J (2020) Comparative metabolomics implicates threitol as a fungal pre-symbiotic signal supporting pathogenicity of Armillaria luteobubalina on eucalypt roots. Plant Cell Environment 374-386 (org/10.1111/pce.13672)

    18. Cheong BE, Ho WWH, Biddulph B, Wallace X, Rathjen T, Roessner U, Dolferus R (2019) Phenotyping reproductive stage chilling and frost tolerance in wheat using targeted metabolome profiling. Metabolomics 15, 144 (https://doi.org/10.1007/s11306-019-1606-2)

    19. Chang J, Cheong BE, Natera S, Roessner U (2019) Morphological and metabolic responses to salt stress of rice cultivars, which differ in salinity tolerance. Plant Physiology and Biochemistry 144, 427-435

    20. Soh PXY, Cely JMM, Mortlock S-A, Jara CJ, Booth R, Natera S, Roessner U, Crossett B, Cordwell SJ, Khatkar M, Williamson P (2019) Genome-wide association studies of 74 plasma metabolites of German shepherd dogs reveal two metabolites associated with genes encoding their enzymes. Metabolomics 15, 123 (org/10.1007/s11306-019-1586-2)

    21. Gupta S, Rupasinghe TWT, Hill CB, Natera SHA, Smith PM, Callahan DL, Roessner U, Boughton BA (2019) Spatio-temporal metabolite and elemental profiling of salt stressed barley seeds during initial stages of germination by MALDI-MSI and µ-XRF spectrometry. Frontiers in Plant Science doi: 10.3389/fpls.2019.01139

    22. Nguyen VL, Palmer L, Roessner U, Stangoulis J (2019) Genotypic variation in the root and shoot metabolite profiles of wheat (Triticum aestivum L.) indicate sustained, preferential carbon allocation as a potential mechanism in phosphorus efficiency. Frontiers in Plant Science – Plant Nutrition (https://doi.org/10.3389/fpls.2019.00995)

    23. Zare T, Rupasinge TWT, Boughton BA, Roessner U (2019) The alteration in the release level of polyunsaturated fatty acids (Omega-3 and Omega-6) and lipids in the untreated and water-soaked chia seeds. Food Research International (https://doi.org/10.1016/j.foodres.2019.108665)

    24. Chen HL, Ng HH, Marshall S, Jelinic M, Rupsinghe TWT, Qin C, Roessner U, Ritchie R, Tare M, Parry L (2019) Relaxin reduces endothelium-derived vasoconstriction in hypertension: revealing new therapeutic insights. British Journal of Pharmacology (https://doi.org/10.1111/bph.14858)

    25. Asami P, Moghaddam L, Rupasinghe TWT, Roessner U, Mundree SG, Williams B (2019) Roots of the resurrection plant Tripogon loliiformis survive desiccation without the activation of autophagy pathways by maintaining energy reserves. Frontiers in Plant Science – Plant Cell Biology 10:459. doi: 10.3389/fpls.2019.00459

    26. Lev S, Rupasinghe T, Desmarini D, Kaufman-Francis K, Sorrell TC, Roessner U, Djordjevic JT (2019) The PHO signaling pathway directs lipid remodeling in Cryptococcus neoformans via DGTS synthase to recycle phosphate during phosphate deficiency. PLOS One 14(2):e0212651. doi: 10.1371/journal.pone.0212651

    27. McLeod V, Lau L, Mathew C, Rupasinghe T, Roessner U, Djouma E, Turner BJ (2019) Androgen receptor antagonism accelerates disease onset in the SOD1G93A mouse model of amyotrophic lateral sclerosis. British Journal of Pharmacology 176, 2111-2130 https://doi.org/10.1111/bph.14657

    28. Wong JW-H, Lutz A, Natera S, Wang M, Ng V, Grigoriev IV, Martin MF, Roessner, U, Anderson IC, Plett JM (2019) The influence of contrasting microbial lifestyles on the pre-symbiotic metabolite responses of Eucalyptus grandis roots. Frontiers in Ecology and Evolution, section Chemical Ecology https://doi.org/10.3389/fevo.2019.00010

    29. Casartelli A, Melino VJ, Baumann U, Riboni M, Suchecki R, Jayasinghe NS, Mendis H, Hoefgen R, Roessner U, Okamoto M, Heuer S (2019) Opposite fates of the purine metabolite allantoin under water and nitrogen restrictions in bread wheat. Plant Mol Biol 99:477–497; https://doi.org/10.1007/s11103-019-00831-z

    30. Shaar L, Ruchama H, Roessner U, Peleg Z (2018) Phenotypic plasticity facilitates alterations in life-history strategies under combinations of environmental stresses. Plant Direct https://doi.org/10.1002/pld3.113

    31. Matthews JL, Oakley CA, Lutz A, Hillyer KE, Roessner U, Grossman AR, Weis VM, Davy SK (2018) Partner switching and metabolic flux in a model cnidarian-Symbiodinium symbiosis. Proceedings of the Royal Society B 285(1892). pii: 20182336. doi: 10.1098/rspb.2018.2336

    32. Melino VJ, Casartelli A, George J, Rupasinghe T, Roessner U, Okamoto M, Heuer S (2018) RNA catabolites contribute to the nitrogen pool and support growth recovery of wheat. Frontiers in Plant Science (doi: 10.3389/fpls.2018.01539)

    33. Varela C, Schmidt SA, Borneman AR, Pang I, Kroemer JO, Khan A, Song X, Hodson M, Solomon M, Mayr CM, Hines W, Pretorius S, Baker M, Roessner U, Mercurio M, Henschke P, Wilkins M, Chambers PJ (2018) Systems-based approaches enable the development of industrial yeast strains with improved phenotypes. Metabolic Engineering 49, 179-191

    34. Ebert B, Rautengarten C, McFarlane HE, Rupasainghe T, Zeng W, Ford K, Scheller HV, Bacic A, Roessner U, Persson S, Heazlewood JL (2018) A single UDP-GlcNAc transporter is essential for the addition of N-acetyl-Dglucosamine onto N-linked glycans and sphingolipids in the Golgi apparatus of plants. Nature Plants 4, 792-801

    35. Parvin S, Uddin S, Bourgault M, Roessner U, Tausz-Posch S, Armstrong R, O’Leary G, Fitzgerald G, Tausz M (2018) Water availability moderates N2 fixation benefit from elevated [CO2]: A 2-year FACE study on lentil (Lens culinaris) in a water limited agro-ecosystem. Plant Cell Environment 41, 2418-2434 (doi: 10.1111/pce.13360)

    36. Barkla B, Garibay-Hernández A, Melzer M, Rupasinghe TWT, Roessner U (2018) Single cell-type analysis of cellular lipid remodelling in response to salinity in the epidermal bladders cells of the model halophyte Mesembryanthemum crystallinum. Plant Cell Environment 41, 2390-2403 (doi: 10.1111/pce.13352)

    37. Liz Morris, O’Brian A, Natera S, Lutz A, Roessner U, Long S (2018) Structural and functional measures of marine microbial communities: an experiment testing application to oil spill management. Marine Pollution Bulletin 131, Part A, 525–529

    38. Debnath M, Ashwath N, Hill CB, Callahan DL, Dias DA, Jayasinghe NS, Midmore DJ, Roessner U (2018) Comparative metabolic and ionomic profiling of two cultivars of Stevia rebaudiana Bert. (Bertoni) grown under salinity stress. Plant Physiol Biochem 129, 56-70

    39. Yu D, Rupasinghe TWT, Boughton BA, Natera SHA, Hill CB, Tarazona P, Feussner I, Roessner U (2018) A high-resolution HPLC-QqTOF platform using parallel reaction monitoring for in-depth lipid discovery and rapid profiling. Analytica Chimica Acta 1026, 87-100

    40. Sarabia D, Boughton BA, Rupasinghe T, Van de Meene AML, Callahan DL, Hill CB, Roessner U (2018) High-mass-resolution MALDI mass spectrometry imaging reveals detailed spatial distribution of metabolites and lipids in barley roots in response to salinity stress. Metabolomics 14:63 doi.org/10.1007/s11306-018-1359-3

    41. Summers M, Rupasinghe T, Vasiljevski ER, Evesson FJ, Mikulec K, Peacock L, Quinlan KG, Cooper S, Roessner U, Stevenson DA, Little D, Schindler A (2018) Dietary intervention rescues myopathy associated with neurofibromatosis type 1. Human Mol Gen 27, 577-588

    42. Hillyer K, Dias DA, Lutz A, Roessner U, Davy S (2018) 13C metabolomics reveals widespread change in carbon fate during coral bleaching. Metabolomics 14: 12 (doi: 1007/s11306-017-1306-8)

    43. Soll C, Silva T, Grossi-de-Sa MF, Bacic A, Boughton BA, Oldach K, Callahan DL, Roessner U, Carneiro R, Pelegrini P, Polez V, Firmino A, Sheedy J, Rocha E, Silva L (2018) Prospection and identification of nematotoxic compounds from Canavalia ensiformis seeds effective in the control of the root knot nematode Meloidogyne incognita. Biotechnol Res Innovation 1, 87-100

    44. Matthews JL, Crowder CM, Oakley CA, Lutz A, Roessner U, Meyer E, Grossman AR, Weis VM2, Davy SK (2017) Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis. PNAS 114, 13194-13199

    45. Luengwilai K, Beckles D, Roessner U, Dias DA, Lui V, Siriphanich J (2018) Identification of physiological changes and key metabolites coincident with postharvest internal browning of pineapple (Ananas comosus) fruit. Postharvest Biol Technol 137, 56-65

    46. Hillyer KE, Dias DA, Lutz A, Wilkinson SP, Roessner U, Davy SK (2017) Mapping carbon fate during bleaching in a model cnidarian symbiosis: the application of 13C metabolomics. New Phytologist 214, 1551-1562

    47. Selby-Pham JM, Lutz A, Moreno-Moyano LT, Boughton BA, Roessner U, Johnson AAT (2017) Diurnal changes in transcript and metabolite levels during the iron deficiency response of rice. Rice 10:14. doi: 10.1186/s12284-017-0152-7

    48. Barbosa GB, Jayasinghe NS, Natera SH, Inutan ED, Peteros NP, Roessner U (2017) From common to rare Zingiberaceae plants – A metabolomics study using GC-MS. Phytochem 140, 141-150

    49. Kiani-Pouya A, Roessner U, Jayasinghe NS, Lutz A, Rupasinghe T, Bohm J, Hedrich R, Shabala S (2017) Epidermal bladder cells confer salinity stress tolerance in the halophyte quinoa and Atriplex species. Plant Cell Environ 40, 1900-1915

    50. Hunter A, Dayalan S, De Souza D, Power B, Lorrimar R, Szabo T, Nguyen T, O’Callaghan S, Hack J, Pyke J, Nahid A, Barrero R, Roessner U, Likic V, Tull D, Bacic A, McConville M, Bellgard M (2017) MASTR-MS: a web-based collaborative laboratory information management system (LIMS) for metabolomics. Metabolomics 13:14 DOI 10.1007/s11306-016-1142-2

    51. Sabermanesh K, Holtham LR, George J, Roessner U, Boughton BA, Heuer S, Tester M, Plett DC, Garnett TP (2017) The transition from a maternal to external nitrogen source in maize seedlings. J Integrative Plant Biol 59, 261-274

    52. Jarvis D, Ho Y, Lightfoot D, Schmöckel S, Li B, Michell C, Kharbatia G, Saber N, Woo Y, Gao G, Sharp A, Borm T, Schijlen E, Mineta K, Ohyanagi H, Dally N, Jung C, Boughton B, Roessner U, Gehring C, Murphy K, Gojobori T, van der Linden G, van Loo R, Jellen E, Maughan P, Negrão S, Tester M (2017) The genome of Chenopodium quinoa. Nature 542, 307-312

    53. Cao D, Lutz A, Hill CB, Callahan DL, Roessner U (2017) A quantitative profiling method of phytohormones and other metabolites applied to barley roots subjected to salinity stress. Frontiers in Plant Science (doi: 10.3389/fpls.2016.02070)

    54. Hillyer KE, Dias DA, Lutz A, Wilkinson SP, Roessner U, Davy SK (2017) Metabolite profiling of symbiont and host during thermal stress and bleaching in the coral Acropora aspera. Coral Reef (DOI 10.1007/s00338-016-1508-y)

    55. Griffin PC, Khadake J, LeMay KS, Lewis SE, Orchard S, Pask A, Pope B, Roessner U, Russell K, Seemann T, Treloar A, Tyagi S, Christiansen JH, Dayalan S, Gladman S, Hangartner SB, Hayden HL, Ho WWH, Keeble-Gagnère G, Korhonen PK, Neish P, Prestes PR, Richardson MF, Watson-Haigh NS, Wyres KL, Young ND, Schneider MV (2017) Best practice data life cycle approaches for the life sciences. F1000Res. 6:1618. (doi: 10.12688/f1000research.12344.2)

    56. Shabala L, Zhang J, Pottosin I, Bose J, Zhu M, Fuglsang AT, Velarde-Buendia A, Massart A, Hill CB, Roessner U, Bacic A, Wu H, Azzarello E, Pandolfi C, Zhou M, Poschenrieder C, Mancuso S, Shabala S (2016) Cell-type specific K+ retention and H+-ATPase activity protect barley (Hordeum vulgare) roots from salinity stress. Plant Physiol 172, 2445-2458

    57. Sroka WD, Boughton BA, Reddy P, Roessner U, Słupski P, Jarzemski P, Markuszewski MJ, Marszałł MP (2016) Determination of amino acids in urine of patients with prostate cancer and benign prostate growth. European J Cancer Prevention DOI: 10.1097/CEJ.0000000000000248)

    58. Hill CB, Cassin A, Keeble-Gagnère, Doblin MS, Bacic A, Roessner U (2016) De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure. Scientific Rep 6:31558 (http://dx.doi.org/10.1038/srep31558)

    59. Plett D, Holtham L, Baumann U, Kalashyan E, Francis K, Enju A, Toubia J, Roessner U, Bacic A, Rafalski A, Dhugga K, Tester M, Garnett T, Kaiser B (2016) Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms. Plant Mol Biol 92, 293-312 (DOI 10.1007/s11103-016-0512-5)

    60. Shelden MC, Dias DA, Jayasinghe NS, Bacic A, Roessner U (2016) Root spatial metabolite profiling of two contrasting barley genotypes (Hordeum vulgare) in response to short-term salt stress. J Exp Bot 67, 3731-3745

    61. Wang Y, Lyu W, Berkowitz O, Radomilja CJD, Law SR, Murcha MW, Carrie C, Teixeira PF, Kmiec B, Duncan O, Van Aken O, Narsai R, Glaser E, Huang S, Roessner U, Millar AH, Whelan J (2016) Inactivation of mitochondrial complex I induces the expression of a twin-cysteine protein that targets and affects cytosolic, chloroplastidic and mitochondrial function. Mol Plant 9, 696-710

    62. Natera SHA, Hill CB, Rupasinghe TWT, Roessner U (2016) Salt-stress induced alterations in the root lipidome of two barley genotypes with contrasting responses to salinity. Funct Plant Biol 43, 207-219

    63. Williams R, Dias DA, Jayasinghe N, Roessner U, Bennett L (2016) Beta-glucan-depleted, glycopeptide-rich extracts from Brewer’s and Baker’s yeast (Saccharomyces cerevisiae) lower interferon-gamma production by stimulated human blood cells in vitro. Food Chem 197 (Part A), 761-768

    64. Callahan DC, Hare DJ, Bishop DP, Doble PA, Roessner, U (2016) Elemental imaging of leaves from the metal hyperaccumulating plant Noccaea caerulescens shows different spatial distribution of Ni, Zn and Cd. RSC Advances 6, 2337 – 2345

    65. Pyke JS, Callahan DL, Bacic A, McConville MJ, Roessner U (2015) A tandem liquid chromatography–mass spectrometry (LC–MS) method for profiling small molecules in complex samples. Metabolomics 11, 1552-1562

    66. Wijetunge CD, Saeed I, Boughton BA, Roessner U, Halgamuge SK (2015) A new peak detection algorithm for MALDI mass spectrometry data base on Asymmetric Pseudo-Voigt model. BMC Genomics 6 (Suppl X), S12

    67. Dias DA, Hill CB, Jayasinghe NS, Atieno J, Sutton T, Roessner U (2015) Quantitative profiling of polar primary metabolites of two chickpea cultivars with contrasting responses to salinity. J Chromat B 1000, 1-13

    68. Wijetunge CD, Saeed I, Boughton BA, Spraggins JM, Caprioli RM, Bacic A, Roessner U, Halgamuge SK (2015) EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. Bioinformatics (doi: 1093/bioinformatics/btv356)

    69. Boughton BA, Reddy P, Boland MP, Roessner U, Yates P (2015) Non-protein amino acids in Australian acacia seed: Implications for food security and recommended processing methods to reduce djenkolic acid. Food Chem 179, 109-115

    70. Hill CB, Taylor JD, Edwards J, Mather D, Langridge P, Bacic A, Roessner U (2015) Detection of QTL for metabolic and agronomic traits in wheat (Triticum aestivum) with adjustments for variation at genetic loci that affect plant phenology. Plant Sci 233, 143-154

    71. Wijetunge CD, Saeed I, Halgamuge SK, Boughton B, Roessner U (2014) Unsupervised learning for exploring MALDI imaging mass spectrometry ‘omics’ data. Information and Automation for Sustainability (ICIAfS), 2014 7th International Conference Proceedings, 1, 22-24

    72. Van Assche R, Temmerman L, Dias DA, Boughton BA, Boonen K, Braeckman BP, Schoofs L, Roessner U (2014) Metabolic profiling of a transgenic Caenorhabditis elegans Alzheimer model. Metabolomics 2, 477-486

    73. Noonan J, Dusting G, Nguyen T, Jenkins A, Eyn Kidd Man R, Best W, Dias DA, Jayasinghe NS, Roessner U, Lamoureux E (2014) Flicker light-induced retinal vasodilation is unaffected by inhibition of epoxyeicosatrienoic acids and prostaglandins in humans. Investigative Ophthalmology Visual Sci 55, 7007-7013

    74. Palmer LJ, Dias DA, Boughton B, Roessner U, Graham RD, Stangoulis JC (2014) Metabolite profiling of wheat (Triticum aestivum) phloem exudate. Plant Methods 10:27. doi: 10.1186/1746-4811-10-27

    75. Foroughi S, Baker AJM, Roessner U, Johnson AA, Bacic A, Callahan DL (2014) Hyperaccumulation of zinc by Noccaea caerulescens results in a cascade of stress responses and changes in the elemental profile. Metallomics 6, 1671-1682

    76. Gholami M, Boughton BA, Fakhari AR, Ghanati F, Mirzaei HH, Borojeni LY, Zhang Y, Breitbach ZS, Armstrong DW, Roessner U (2014) Metabolomic study reveals a selective accumulation of L-arginine in the D-ornithine treated tobacco cell suspension culture. Process Biochem 49, 140-147

    77. Aizat WM, Dias DA, Stangoulis JCR, Able JA, Roessner U, Able AJ (2014) Metabolomics of capsicum ripening reveals modification of the ethylene pathway and carbon metabolism. Postharvest Biol Technol 89, 19-31

    78. Pavagadhi S, Natera S, Roessner U, Balasubramanian R (2013) Insights into lipidomic perturbations in zebrafish tissues upon exposure to microcystin-LR and microcystin-RR. Env Sci Technol 47, 4376-4384

    79. Wijetunge CD, Li Z, Saeed I, Bowne J, Hsu AL, Roessner U, Bacic A, Halgamuge SK (2013) Exploratory analysis of high-throughput metabolomic data. Metabolomics (doi: 10.1007/s11306-013-0545-6)

    80. Liu D, Ford KL, Roessner U, Natera S, Cassin AM, Patterson JH, Bacic A (2013) Rice suspension cultured cells are evaluated as a model system to study salt responsive networks in plants using a combined proteomic and metabolomic profiling approach. Proteomics 12-13, 2046-2062

    81. Hill CB, Taylor JD, Edwards J, Mather D, Bacic A, Langridge P, Roessner U (2013) Whole genome mapping of agronomic and metabolic traits to identify novel quantitative trait loci in bread wheat (Triticum aestivum) grown in a water-limited environment. Plant Physiol 162, 1266-1281

    82. Shelden MC, Roessner U, Tester M, Bacic T (2013) Genetic variation in the root growth response of barley cultivars to salinity stress. Funct Plant Biol 40, 516-530

    83. Hill CB, Jha D, Bacic A, Tester M, Roessner U (2013) Characterization of ion contents and metabolic responses to salt stress of different AtHKT1;1 genotypes and their parental strains in Arabidopsis thaliana. Mol Plant 6, 350-368

    84. Garnett T, Conn V, Plett D, Conn S, Zanghellini J, Mackenzie N, Enju A, Francis K, Holtham L, Roessner U, Bacic A, Shirley N, Rafalski A, Dhugga K, Tester M, Kaiser BN (2013) The response of the maize nitrate transport system to nitrogen demand and supply across the lifecycle. New Phytol 198, 82-94

    85. Kabir AH, Paltridge NG, Roessner U, Stangoulis JCR (2013) Mechanisms associated with Fe-deficiency tolerance and signalling in shoots of Pisum sativum Physiologia Plantarum (doi: 10.1111/j.1399-3054.2012.01682.x)

    86. De Livera AM, Dias DA, De Souza DP, Rupasinghe T, Pyke J, Tull D, Roessner U, McConville M, Speed TP (2012) Normalising and integrating metabolomics data. Anal Chem 84, 10768-10776

    87. O’Callaghan S, DeSouza DP, Isaac A, Wang Q, Hodkinson L, Olshansky M, Erwin T, Appelbe B, Tull DL, Roessner U, Bacic A, McConville MJ, Likic VA (2012) PyMS: a Python toolkit for processing of gas chromatography–mass spectrometry (GC-MS) data. Application and comparative study of selected tools. BMC Bioinformatics 13, 115-

    88. Temmerman L, De Livera AM, Bowne JB, Sheedy JR, Callahan DL, Nahid A, De Souza DP, Schoofs L, Tull DL, McConville MJ, Roessner U, Wentworth JM (2012) Cross-platform urine metabolomics of experimental hyperglycemia in type 2 diabetes. J Diabetes Metabolism. http://dx.doi.org/10.4172/2155-6156.S6-002

    89. Callahan DL, Roessner U, Dumontet V, Livera AMD, Doronilla A, Baker AJM, Kolev SD. (2012) Elemental and metabolite profiling of nickel hyperaccumulators from New Caledonia. Phytochem 81, 80-89

    90. Bowne JB, Erwin TA, Juttner J, Schnurbusch T, Langridge P, Bacic A, Roessner U (2012) Drought responses of wheat leaf tissues at the metabolite level. Mol Plant 5, 418-429

    91. Boughton BA, Callahan DL, Silva C, Bowne J, Nahid A, Rupasinghe T, Tull DL, McConville MJ, Bacic A, Roessner U (2011) Comprehensive profiling and quantitation of amine group containing metabolites. Anal Chem 83, 7523-7530

    92. Gruber BD, Delhaize E, Richardson AE, Roessner U, James RA, Howitt SM, Ryan PR (2011) Characterisation of HvALMT1 function in transgenic barley plants. Funct Plant Biol 38, 163-175

    93. Lukman AI, Gong B, Marjo CE, Roessner U, Harris AT (2011) Facile synthesis, stabilization, and anti-bacterial performance of discrete Ag nanoparticles using Medicago sativa seed exudates. J Colloid Interface Sci 353, 433–444

    94. Rao SR, Ford KL, Cassin AM, Roessner U, Patterson JH, Bacic A (2010) Proteomic and metabolic profiling of rice suspension culture cells as a model to study abscisic acid signaling response pathways in plants. J Proteome Res 9, 6623-6634

    95. Kibble NAJ, Mehdi Sohani M, Shirley N, Byrt C, Roessner U, Bacic A, Schmidt O, Schultz CJ (2009) Phylogenetic analysis and functional characterisation of strictosidine synthase-like genes in Arabidopsis thaliana. Funct Plant Biol36, 1098-1109

    96. Widodo, Patterson JH, Newbigin E, Tester M, Bacic A, Roessner U (2009) Metabolic responses to salt stress of barley (Hordeum vulgare ) cultivars, Sahara and Clipper, which differ in salinity tolerance. J Exp Bot 60, 4089-4103

    97. Callahan DL, DeSouza D, Bacic A, Roessner U (2009) Profiling of polar metabolites in biological extracts using diamond hydride-based aqueous normal phase chromatography. J Sep Sci 32, 2273-2280

    98. Callahan DL, Roessner U, Dumontet V, Perrier N, Wedd AG, O’Hair RAJ, Baker AJM, Kolev SD (2008) LC-MS and GC-MS metabolite profiling of nickel(II) complexes in the latex of nickel- hyperaccumulating tree Sebertia acuminata and identification of methylated aldaric acid as a new nickel(II) ligand. Phytochem 69, 240-251

    99. Huang CY, Roessner U, Eickmeier I, Genc Y, Callahan DL, Shirley N, Langridge P, Bacic A (2008) Metabolite profiling reveals distinct changes in carbon and nitrogen metabolism in phosphate-deficient barley plants (Hordeum vulgare). Plant Cell Physiol 49, 691-703

    100. Pereira-Netto AB, Roessner U, Fujioka S, Bacic A, Asami T, Yoshida S, Clouse SD. (2008) Shooting control by brassinosteroids: metabolomic analysis and effect of brassinazole on Malus prunifolia, the Marubakaido apple rootstock. Tree Physiol 29, 607-620

    101. Stamova BS, Roessner U, Suren S, Laudencia-Chingcuanco D, Bacic A, Beckles DM (2008) Metabolic profiling of transgenic wheat over-expressing the high- molecular-weight Dx5 glutenin subunit. Metabolomics 5, 239-350

    102. Glassop D, Roessner U, Bacic A, Bonnett G (2007) Changes in the sugarcane metabolome with stem development. Are they related to sucrose accumulation? Plant Cell Physiol 48, 573-584

    103. Semel Y, Schauer N, Roessner U, Zamir D, Fernie AR (2007) Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype. Metabolomics 3, 289-295

    104. Jacobs A, Lunde C, Bacic A, Tester M, Roessner U (2007) The impact of constitutive expression of a moss Na+ transporter on the metabolomes of rice and barley. Metabolomics 3, 307-317

    105. Schauer N, Semel Y, Roessner U, Gur A, Balbo I, Carrari F, Pleban T, Perez-Melis A, Bruedigam C, Kopka J, Willmitzer L, Zamir D, Fernie AR (2006) Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotech 24, 447-454

    106. Roessner U, Patterson JH, Forbes MG, Fincher GB, Langridge P, Bacic A (2006) An Investigation of boron toxicity in barley using metabolomics. Plant Physiol 142, 1087-1101

    107. Hosp J, Tashpulatov A, Roessner U, Barsova E, Katholnigg H, Steinborn R, Melikant B, Lukyanov S, Heberle-Bors E, Touraev A (2006) Transcriptional and metabolic profiles of stress-induced, embryogenic tobacco microspores. Plant Mol Biol 63, 137-149

    108. Schauer N, Steinhauser D, Strelkov S, Schomburg D, Allison G, Moritz T, Lundgren K, Roessner-Tunali U, Forbes MG, Willmitzer L, Fernie AR, Kopka J (2005) GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett 579, 1332-1337

    109. Gass N, Glagotskaia T, Mellema S, Barone M, Mandel T, Roessner-Tunali U, Kuhlemeier C (2005) Pyruvate decarboxylase provides growing pollen tubes with a competitive advantage in petunia. Plant Cell 17, 2355-2368

    110. Roessner-Tunali U, Lui J, Leisse A, Balbo I, Perez-Melis A, Willmitzer L, Fernie AR (2004) Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography‐mass spectrometry following incubation in 13C labelled isotopes. Plant J 39, 668-679

    111. Roessner-Tunali U, Hegemann B, Lytovchenko A, Carrari F, Bruedigam C, Granot D, Fernie AR (2003) Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol 133, 84-99

    112. Roessner-Tunali U, Urbanczyk-Wochniak E, Czechowski T, Kolbe A, Willmitzer L, Fernie AR (2003) De novo amino acid biosynthesis in plant storage tissues is regulated by sucrose levels. Plant Physiol 133, 683-692

    113. Leggewie G, Kolbe A, Lemoine R, Roessner U, Lytovchenko A, Frommer WB, Riesmeier JW, Willmitzer L, Fernie AR (2003) Overexpression of the sucrose transporter SoSUT1 in potato results in alterations in leaf carbon partitioning and in sucrose export but has little impact on tuber metabolism. Planta 217, 158-167

    114. Giege P, Heazlewood JL, Roessner-Tunali U, Millar AH, Fernie AR, Leaver CJ, Sweetlove LJ (2003) Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis Plant Cell 15, 2140-2151

    115. Urbanczyk-Wochniak E, Luedemann A, Kopka J, Selbig J, Roessner-Tunali U, Willmitzer L, Fernie AR (2003) Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep 4, 989-992

    116. Urbanczyk-Wochniak E, Leisse A, Roessner-Tunali U, Lytovchenko A, Riesmeier J, Willmitzer L, Fernie AR (2003) Expression of a bacterial glucose (xylose) isomerase in potato tubers results in an altered hexose composition and a consequent induction of metabolism. Plant Cell Physiol 44, 1359-1367

    117. Fernie AR, Tauberger E, Roessner U, Lytochenko A, Trethewey RN, Willmitzer L (2002) Antisense repression of cytosolic phosphoglucomutase in potato (Solanum tuberosum) results in a severe growth retardation, reduction in tuber number and altered carbon metabolism. Planta 214, 510-520

    118. Westram A, Lloyd JR, Roessner U, Riesmeier JW, Kossmann J (2002) Increases of 3-phosphoglyceric acid in potato plants through antisense reduction of cytoplasmic phosphoglycerate mutase impairs photosynthesis and growth, but does not increase starch contents. Plant Cell Environ 25, 1133-1143

    119. Kühn C, Hajirezaei M-R, Fernie AR, Roessner-Tunali U, Czechowski T, Hirner B, Frommer WB (2002) Tuber-specific antisense inhibition of the sucrose transporter StSUT1 in transgenic potato plants. Plant Physiol 131, 102-113

    120. Roessner U, Luedemann A, Brust D, Fiehn O, Linke T, Willmitzer L, Fernie AR (2001) Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13, 11-29

    121. Roessner U, Willmitzer L, Fernie AR (2001) High-resolution metabolic phenotyping of genetically and environmentally diverse plant systems – identification of phenocopies. Plant Physiol 127, 749-764

    122. Fernie AR, Roessner U, Geigenberger P (2001). The sucrose analog palatinose leads to a stimulation of sucrose degradation and starch synthesis when supplied to discs of growing potato tubers (Solanum tuberosum). Plant Physiol 125, 1967-1977

    123. Farré EM, Tiessen A, Roessner U, Geigenberger P, Trethewey RN, Willmitzer L (2001) Analysis of the compartmentation of glycolytic intermediates, nucleotides, sugars, organic acids, amino acids and sugar alcohols in potato tubers using a non-aqueous fractionation method. Plant Physiol 127, 685-700

    124. Fernie AR, Roessner U, Leisse A, Lubeck J, Trethewey RN, Willmitzer L (2001) Simultaneous antagonistic modulation of enzyme activities in transgenic plants through the expression of a chimeric transcript. Plant Physiol Biochem 39, 825-830

    125. Zeh M, Casazza AP, Kreft O, Roessner U, Bieberich K, Willmitzer L, Hoefgen R, Hesse H (2001) Antisense inhibition of threonine synthase leads to high methionine content in transgenic potato plants. Plant Physiol 127, 792-802

    126. Fernie AR, Roessner U, Trethewey RN, Willmitzer L (2001) The contribution of plastidial phosphoglucomutase to the control of starch synthesis within potato tubers. Planta, 213, 418-426

    127. Roessner U, Wagner C, Kopka J, Trethewey RN, Willmitzer L (2000) Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant J 23, 131-142

    128. Edwards A, Fulton DC, Hylton CM, Jobling SA, Gidley M, Roessner U, Martin C, Smith AM (1999) A combined reduction in activity of starch synthases II and III of potato has novel effects of the starch of tubers. Plant J 17, 251-261

    129. Veramendi J, Rössner U, Renz A, Willmitzer L, Trethewey RN (1999) Antisense repression of hexokinase 1 leads to an accumulation of starch in leaves of transgenic potato plants but not to significant changes in tuber carbohydrate metabolism. Plant Physiol 121, 123-133

    130. Zhu Z-P, Hylton CM, Rössner U, Smith AM (1998) Characterisation of starch-debranching enzymes in pea embryos. Plant Physiol 118, 581-590